IO: graphic files, movie files, coeff files and potential files

out_graph_file.f90

Description

This module contains the subroutines that store the 3-D graphic files.

Quick access

Variables:

graph_mpi_fh, info, n_fields, n_graph, n_graph_file, size_of_header

Routines:

close_graph_file(), graphout(), graphout_header(), graphout_ic(), graphout_mpi(), graphout_mpi_header(), open_graph_file()

Needed modules

• parallel_mod: This module contains the blocking information

• precision_mod: This module controls the precision used in MagIC

• constants (one()): module containing constants and parameters used in the code.

• truncation (lm_maxmag(), n_r_maxmag(), n_r_ic_maxmag(), lm_max(), n_theta_max(), n_phi_tot(), n_r_max(), l_max(), minc(), n_phi_max(), n_r_ic_max(), nlat_padded()): This module defines the grid points and the truncation

• radial_functions (r_cmb(), orho1(), or1(), or2(), r(), r_icb(), r_ic(), o_r_ic(), o_r_ic2()): This module initiates all the radial functions (transport properties, density, temperature, cheb transforms, etc.)

• radial_data (nrstart(), n_r_cmb()): This module defines the MPI decomposition in the radial direction.

• physical_parameters (ra(), ek(), pr(), prmag(), radratio(), sigma_ratio(), raxi(), sc(), stef()): Module containing the physical parameters

• num_param (vscale()): Module containing numerical and control parameters

• horizontal_data (theta_ord(), o_sin_theta(), n_theta_cal2ord()): Module containing functions depending on longitude and latitude plus help arrays depending on degree and order

• logic (l_mag(), l_cond_ic(), l_pressgraph(), l_chemical_conv(), l_heat(), l_save_out(), l_phase_field()): Module containing the logicals that control the run

• output_data (runid(), n_log_file(), log_file(), tag()): This module contains the parameters for output control

• sht (torpol_to_spat_ic())

Variables

• graphout_mod/graph_mpi_fh [integer,private]

• graphout_mod/info [integer,private]

• graphout_mod/n_fields [integer,private]

• graphout_mod/n_graph [integer,private/optional/default=0]

• graphout_mod/n_graph_file [integer,public]

• graphout_mod/size_of_header [integer,private]

• graphout_mod/write_one_field [private]

Subroutines and functions

subroutine  graphout_mod/open_graph_file(n_time_step, timescaled, l_ave[, n_graph_handle])

Parameters:

• n_time_step [integer ,in]

• timescaled [real ,in]

• l_ave [logical ,in]

Options:

n_graph_handle [integer ,inout,]

Called from:

fields_average(), step_time()

Call to:

mpiio_setup()

subroutine  graphout_mod/close_graph_file([n_graph_handle])

This routine handles the closing of the Graphic files

Options:

n_graph_handle [integer ,inout,]

Called from:

fields_average(), step_time()

subroutine  graphout_mod/graphout(n_r, vr, vt, vp, br, bt, bp, sr, prer, xir, phir[, n_graph_handle])

Output of components of velocity, magnetic field vector, entropy and composition for graphic outputs.

Parameters:

• n_r [integer ,in] :: radial grod point no.

• vr (*,*) [real ,in]

• vt (*,*) [real ,in]

• vp (*,*) [real ,in]

• br (*,*) [real ,in]

• bt (*,*) [real ,in]

• bp (*,*) [real ,in]

• sr (*,*) [real ,in]

• prer (*,*) [real ,in]

• xir (*,*) [real ,in]

• phir (*,*) [real ,in]

Options:

n_graph_handle [integer ,in,] :: File index

subroutine  graphout_mod/graphout_header(time[, n_graph_handle])

Parameters:

time [real ,in]

Options:

n_graph_handle [integer ,in,]

subroutine  graphout_mod/graphout_mpi(n_r, vr, vt, vp, br, bt, bp, sr, prer, xir, phir[, n_graph_handle])

MPI version of the graphOut subroutine (use of MPI_IO)

Parameters:

• n_r [integer ,in] :: radial grid point no.

• vr (*,*) [real ,in]

• vt (*,*) [real ,in]

• vp (*,*) [real ,in]

• br (*,*) [real ,in]

• bt (*,*) [real ,in]

• bp (*,*) [real ,in]

• sr (*,*) [real ,in]

• prer (*,*) [real ,in]

• xir (*,*) [real ,in]

• phir (*,*) [real ,in]

Options:

n_graph_handle [integer ,in,]

Called from:

fields_average()

subroutine  graphout_mod/graphout_mpi_header(time[, n_graph_handle])

Writes the header of the G file (MPI version)

Parameters:

time [real ,in]

Options:

n_graph_handle [integer ,in,]

Called from:

fields_average()

subroutine  graphout_mod/graphout_ic(b_ic, db_ic, aj_ic, bicb[, n_graph_handle])

Purpose of this subroutine is to write inner core magnetic field onto graphic output file. If the inner core is insulating (l_cond_ic=false) the potential field is calculated from the outer core field at r=r_cmb. This version assumes that the fields are fully local on the rank which is calling this routine (usually rank 0).

Parameters:

• b_ic (*,*) [complex ,in]

• db_ic (*,*) [complex ,in]

• aj_ic (*,*) [complex ,in]

• bicb (*) [complex ,in]

Options:

n_graph_handle [integer ,in,]

Called from:

fields_average(), output()

Call to:

torpol_to_spat_ic()

movie.f90

Quick access

Variables:

frames, get_movie_type, licfield, lstoremov, movie, movie_const, movie_file, moviedipcolat, moviediplon, moviedipstrength, moviedipstrengthgeo, n_frame_work, n_md, n_movie_const, n_movie_field_start, n_movie_field_stop, n_movie_field_type, n_movie_fields, n_movie_fields_ic, n_movie_fields_max, n_movie_file, n_movie_surface, n_movie_type, n_movies, n_movies_max

Routines:

finalize_movie_data(), initialize_movie_data(), movie_gather_frames_to_rank0()

Needed modules

• parallel_mod: This module contains the blocking information

• precision_mod: This module controls the precision used in MagIC

• truncation (n_r_max(), n_theta_max(), n_phi_max(), minc(), n_r_ic_max(), n_r_tot()): This module defines the grid points and the truncation

• logic (l_store_frame(), l_save_out(), l_movie(), l_movie_oc(), l_geosmovie(), l_movie_ic(), l_htmovie(), l_dtbmovie()): Module containing the logicals that control the run

• radial_data (nrstart(), nrstop(), n_r_icb(), n_r_cmb(), radial_balance()): This module defines the MPI decomposition in the radial direction.

• radial_functions (r_cmb(), r_icb(), r(), r_ic()): This module initiates all the radial functions (transport properties, density, temperature, cheb transforms, etc.)

• horizontal_data (theta_ord(), phi(), n_theta_ord2cal()): Module containing functions depending on longitude and latitude plus help arrays depending on degree and order

• output_data (n_log_file(), log_file(), tag()): This module contains the parameters for output control

• charmanip (capitalize(), delete_string(), dble2str()): This module contains several useful routines to manipule character strings

• useful (logwrite(), abortrun()): This module contains several useful routines.

• constants (pi(), one()): module containing constants and parameters used in the code.

• mem_alloc (bytes_allocated()): This little module is used to estimate the global memory allocation used in MagIC

Variables

• movie_data/frames (*) [real,allocatable/public]

• movie_data/get_movie_type [private]

• movie_data/licfield (30) [logical,public]

• movie_data/lstoremov (30) [logical,public]

• movie_data/movie (30) [character(len=80),public]

  ‘

• movie_data/movie_const (30) [real,public]

• movie_data/movie_file (30) [character(len=72),public]

• movie_data/moviedipcolat [real,public]

• movie_data/moviediplon [real,public]

• movie_data/moviedipstrength [real,public]

• movie_data/moviedipstrengthgeo [real,public]

• movie_data/n_frame_work [integer,public]

• movie_data/n_md [integer,public]

• movie_data/n_movie_const (30) [integer,public]

• movie_data/n_movie_field_start (6,30) [integer,public]

• movie_data/n_movie_field_stop (6,30) [integer,public]

• movie_data/n_movie_field_type (6,30) [integer,public]

• movie_data/n_movie_fields (30) [integer,public]

• movie_data/n_movie_fields_ic (30) [integer,public]

• movie_data/n_movie_fields_max [integer,parameter=6]

  Max no. of fields per movie

• movie_data/n_movie_file (30) [integer,public]

• movie_data/n_movie_surface (30) [integer,public]

• movie_data/n_movie_type (30) [integer,public]

• movie_data/n_movies [integer,public]

• movie_data/n_movies_max [integer,parameter=30]

  Max no. of different movies

Subroutines and functions

subroutine  movie_data/initialize_movie_data()

This routine is called during the initialization of the code. It allows to:

• Estimate the required memory imprint and allocate the arrays accordingly

• Open the requested movie files

Called from:

magic

subroutine  movie_data/finalize_movie_data()

Close movie files

Called from:

magic

subroutine  movie_data/movie_gather_frames_to_rank0()

MPI communicators for movie files

Called from:

output()

Call to:

abortrun()

out_movie_file.f90

Quick access

Variables:

get_b_surface, get_sl, store_fields_3d, store_fields_p, store_fields_r, store_fields_sur, store_fields_t

Routines:

get_fl(), store_movie_frame(), write_movie_frame()

Needed modules

• precision_mod: This module controls the precision used in MagIC

• parallel_mod (rank()): This module contains the blocking information

• geos (cyl(), n_s_max(), write_geos_frame()): This module is used to compute z-integrated diagnostics such as the degree of geostrophy or the separation of energies between inside and outside the tangent cylinder. This makes use of a local Simpson’s method. This also

• communications (gt_oc(), gather_all_from_lo_to_rank0()): This module contains the different MPI communicators used in MagIC.

• truncation (n_phi_max(), n_theta_max(), minc(), lm_max(), l_max(), n_m_max(), lm_maxmag(), n_r_maxmag(), n_r_ic_maxmag(), n_r_ic_max(), n_r_max(), nlat_padded()): This module defines the grid points and the truncation

• movie_data (frames(), n_movie_fields(), n_movies(), n_movie_surface(), n_movie_const(), n_movie_field_type(), n_movie_field_start(), n_movie_field_stop(), moviedipcolat(), moviediplon(), moviedipstrength(), moviedipstrengthgeo(), n_movie_type(), lstoremov(), n_movie_file(), n_movie_fields_ic(), movie_file(), movie_const())

• radial_data (n_r_icb(), n_r_cmb()): This module defines the MPI decomposition in the radial direction.

• radial_functions (orho1(), orho2(), or1(), or2(), or3(), or4(), beta(), r_surface(), r_cmb(), r(), r_ic()): This module initiates all the radial functions (transport properties, density, temperature, cheb transforms, etc.)

• physical_parameters (lffac(), radratio(), ra(), ek(), pr(), prmag()): Module containing the physical parameters

• num_param (vscale(), tscale()): Module containing numerical and control parameters

• blocking (lm2l(), lm2(), llmmag(), ulmmag()): Module containing blocking information

• horizontal_data (o_sin_theta(), sintheta(), costheta(), n_theta_cal2ord(), o_sin_theta_e2(), phi(), theta_ord()): Module containing functions depending on longitude and latitude plus help arrays depending on degree and order

• fields (w_rloc(), b_rloc(), b_ic(), bicb()): This module contains all the fields used in MagIC in the hybrid (LM,r) space as well as their radial derivatives. It defines both the LM-distributed arrays and the R-distributed arrays….

• sht (torpol_to_spat(), toraxi_to_spat())

• logic (l_save_out(), l_cond_ic(), l_mag()): Module containing the logicals that control the run

• constants (zero(), one(), two()): module containing constants and parameters used in the code.

• out_dtb_frame (write_dtb_frame())

• output_data (runid()): This module contains the parameters for output control

• useful (abortrun()): This module contains several useful routines.

Variables

• out_movie/get_b_surface [private]

• out_movie/get_sl [private]

• out_movie/store_fields_3d [private]

• out_movie/store_fields_p [private]

• out_movie/store_fields_r [private]

• out_movie/store_fields_sur [private]

• out_movie/store_fields_t [private]

Subroutines and functions

subroutine  out_movie/store_movie_frame(n_r, vr, vt, vp, br, bt, bp, sr, drsr, xir, phir, dvrdp, dvpdr, dvtdr, dvrdt, cvr, cbr, cbt)

Controls output of movie frames. Usually called from radialLoop.

Parameters:

• n_r [integer ,in] :: radial grid point no.

• vr (*,*) [real ,in]

• vt (*,*) [real ,in]

• vp (*,*) [real ,in]

• br (*,*) [real ,in]

• bt (*,*) [real ,in]

• bp (*,*) [real ,in]

• sr (*,*) [real ,in]

• drsr (*,*) [real ,in]

• xir (*,*) [real ,in]

• phir (*,*) [real ,in]

• dvrdp (*,*) [real ,in]

• dvpdr (*,*) [real ,in]

• dvtdr (*,*) [real ,in]

• dvrdt (*,*) [real ,in]

• cvr (*,*) [real ,in]

• cbr (*,*) [real ,in]

• cbt (*,*) [real ,in]

subroutine  out_movie/write_movie_frame(n_frame, time, b_lmloc, db_lmloc, aj_lmloc, dj_lmloc, b_ic, db_ic, aj_ic, dj_ic, omega_ic, omega_ma)

Writes different movie frames into respective output files. Called from rank 0 with full arrays in standard LM order.

Parameters:

• n_frame [integer ,in]

• time [real ,in]

• b_lmloc (1 - llmmag + ulmmag,n_r_maxmag) [complex ,in]

• db_lmloc (1 - llmmag + ulmmag,n_r_maxmag) [complex ,in]

• aj_lmloc (1 - llmmag + ulmmag,n_r_maxmag) [complex ,in]

• dj_lmloc (1 - llmmag + ulmmag,n_r_maxmag) [complex ,in]

• b_ic (lm_maxmag,n_r_ic_maxmag) [complex ,in]

• db_ic (lm_maxmag,n_r_ic_maxmag) [complex ,in]

• aj_ic (lm_maxmag,n_r_ic_maxmag) [complex ,in]

• dj_ic (lm_maxmag,n_r_ic_maxmag) [complex ,in]

• omega_ic [real ,in]

• omega_ma [real ,in]

Called from:

output()

Call to:

gather_all_from_lo_to_rank0(), abortrun(), write_geos_frame(), write_dtb_frame()

subroutine  out_movie/get_fl(fl, n_r, l_ic)

Return field fl whose contourlines are the fields lines of the axisymmetric poloidal mangetic field.

\[f(r,\theta) = \dfrac{1}{r}\dfrac{\partial}{\partial \theta} b(r,\theta,m=0)\]

This routine is called for l_ic=.true. only from rank 0 with full field b_ic in standard lm ordering available. The case l_ic=.false. is called from all ranks and uses b_Rloc.

Parameters:

• fl (*) [real ,out] :: Field for field lines

• n_r [integer ,in] :: No. of radial grid point

• l_ic [logical ,in] :: =true if inner core field

Called from:

store_movie_frame_ic()

Call to:

toraxi_to_spat()

store_movie_IC.f90

Quick access

Routines:

store_movie_frame_ic()

Needed modules

• precision_mod: This module controls the precision used in MagIC

• truncation (minc(), lm_maxmag(), n_r_maxmag(), n_r_ic_maxmag(), n_phi_max(), lm_max(), n_r_ic_max(), l_max(), n_theta_max(), nlat_padded()): This module defines the grid points and the truncation

• radial_data (n_r_icb()): This module defines the MPI decomposition in the radial direction.

• radial_functions (r_ic(), r_icb(), o_r_ic2(), o_r_ic()): This module initiates all the radial functions (transport properties, density, temperature, cheb transforms, etc.)

• physical_parameters (lffac()): Module containing the physical parameters

• horizontal_data (n_theta_cal2ord(), o_sin_theta()): Module containing functions depending on longitude and latitude plus help arrays depending on degree and order

• logic (l_cond_ic()): Module containing the logicals that control the run

• movie_data (frames(), n_movie_field_stop(), n_movie_field_start(), n_movie_type(), n_movie_const(), n_movie_fields_ic(), n_movie_surface(), n_movies(), n_movie_field_type(), n_movie_fields())

• out_movie (get_fl())

• constants (one()): module containing constants and parameters used in the code.

• sht (torpol_to_spat_ic(), torpol_to_curl_spat_ic())

Variables

Subroutines and functions

subroutine  out_movie_ic/store_movie_frame_ic(bicb, b_ic, db_ic, ddb_ic, aj_ic, dj_ic)

Controls storage of IC magnetic field in movie frame.

Parameters:

• bicb (lm_maxmag) [complex ,in]

• b_ic (lm_maxmag,n_r_ic_maxmag) [complex ,in]

• db_ic (lm_maxmag,n_r_ic_maxmag) [complex ,in]

• ddb_ic (lm_maxmag,n_r_ic_maxmag) [complex ,in]

• aj_ic (lm_maxmag,n_r_ic_maxmag) [complex ,in]

• dj_ic (lm_maxmag,n_r_ic_maxmag) [complex ,in]

Called from:

output()

Call to:

torpol_to_spat_ic(), torpol_to_curl_spat_ic(), get_fl()

out_coeff.f90

Description

This module contains the subroutines that calculate the Bcmb files, the [B|V|T]_coeff_r files and the [B|V|T]_lmr files

Quick access

Variables:

b_r_file, n_b_r_file, n_b_r_sets, n_t_r_file, n_t_r_sets, n_v_r_file, n_v_r_sets, n_xi_r_file, n_xi_r_sets, t_r_file, v_r_file, write_coeff_r, xi_r_file

Routines:

finalize_coeff(), initialize_coeff(), write_bcmb(), write_coeffs(), write_pot(), write_pot_mpi()

Needed modules

• precision_mod: This module controls the precision used in MagIC

• parallel_mod: This module contains the blocking information

• mem_alloc (bytes_allocated()): This little module is used to estimate the global memory allocation used in MagIC

• logic (l_r_field(), l_cmb_field(), l_save_out(), l_average(), l_cond_ic(), l_r_fieldt(), l_r_fieldxi(), l_mag()): Module containing the logicals that control the run

• radial_functions (r(), rho0()): This module initiates all the radial functions (transport properties, density, temperature, cheb transforms, etc.)

• radial_data (nrstart(), nrstop()): This module defines the MPI decomposition in the radial direction.

• physical_parameters (ra(), ek(), pr(), prmag(), radratio(), sigma_ratio(), raxi(), sc()): Module containing the physical parameters

• num_param (tscale()): Module containing numerical and control parameters

• blocking (lm2(), llm(), ulm()): Module containing blocking information

• truncation (lm_max(), l_max(), minc(), n_r_max(), n_r_ic_max(), m_min(), m_max()): This module defines the grid points and the truncation

• communications (gather_from_lo_to_rank0(), gather_all_from_lo_to_rank0(), gt_ic(), gt_oc()): This module contains the different MPI communicators used in MagIC.

• output_data (tag(), n_coeff_r(), n_r_array(), n_r_step(), l_max_r(), n_coeff_r_max()): This module contains the parameters for output control

• constants (two(), half()): module containing constants and parameters used in the code.

Variables

• out_coeff/b_r_file (*) [character(len=72),private/allocatable]

• out_coeff/filehandle [integer,private]

• out_coeff/n_b_r_file (*) [integer,private/allocatable]

• out_coeff/n_b_r_sets (*) [integer,private/allocatable]

• out_coeff/n_t_r_file (*) [integer,private/allocatable]

• out_coeff/n_t_r_sets (*) [integer,private/allocatable]

• out_coeff/n_v_r_file (*) [integer,private/allocatable]

• out_coeff/n_v_r_sets (*) [integer,private/allocatable]

• out_coeff/n_xi_r_file (*) [integer,private/allocatable]

• out_coeff/n_xi_r_sets (*) [integer,private/allocatable]

• out_coeff/t_r_file (*) [character(len=72),private/allocatable]

• out_coeff/v_r_file (*) [character(len=72),private/allocatable]

• out_coeff/write_coeff_r [private]

• out_coeff/xi_r_file (*) [character(len=72),private/allocatable]

Subroutines and functions

subroutine  out_coeff/initialize_coeff()

Called from:

initialize_output()

subroutine  out_coeff/finalize_coeff()

Called from:

finalize_output()

subroutine  out_coeff/write_bcmb(time, b_lmloc, l_max_cmb, n_cmb_sets, cmb_file, n_cmb_file)

Each call of this subroutine writes time and the poloidal magnetic potential coefficients b at the CMB up to degree and order l_max_cmb at the end of output file cmb_file. The parameters l_max_cmb, minc and the number of stored coeffs are written into the header of cmb_file. Each further set contains:

Real and imaginary part of b(*) for all orders m<=l are written for a specific degree l, then for the degrees l+1, l+2, l_max_cmb.

Parameters:

• time [real ,in] :: Time

• b_lmloc (1 - llm + ulm) [complex ,in] :: Poloidal field potential

• l_max_cmb [integer ,inout] :: Max degree of output

• n_cmb_sets [integer ,inout] :: Total no. of cmb sets,

• cmb_file [character(len=*),in] :: Name of output file

• n_cmb_file [integer ,inout] :: Output unit for $cmb_file

Called from:

fields_average(), output()

Call to:

gather_from_lo_to_rank0()

subroutine  out_coeff/write_coeffs(w_lmloc, dw_lmloc, ddw_lmloc, z_lmloc, b_lmloc, db_lmloc, ddb_lmloc, aj_lmloc, s_lmloc, xi_lmloc, timescaled)

This routine handles the writing of coefficients at a given depth

Parameters:

• w_lmloc (*,*) [complex ,in]

• dw_lmloc (*,*) [complex ,in]

• ddw_lmloc (*,*) [complex ,in]

• z_lmloc (*,*) [complex ,in]

• b_lmloc (*,*) [complex ,in]

• db_lmloc (*,*) [complex ,in]

• ddb_lmloc (*,*) [complex ,in]

• aj_lmloc (*,*) [complex ,in]

• s_lmloc (*,*) [complex ,in]

• xi_lmloc (*,*) [complex ,in]

• timescaled [real ,in]

Called from:

output()

subroutine  out_coeff/write_pot_mpi(time, b, aj, b_ic, aj_ic, npotsets, root, omega_ma, omega_ic)

This routine stores the fields in (lm,r) space using MPI-IO

Parameters:

• time [real ,in] :: Time

• b (lm_max,1 - nrstart + nrstop) [complex ,in] :: Poloidal potential

• aj (lm_max,1 - nrstart + nrstop) [complex ,in] :: Toroidal potential

• b_ic (1 - llm + ulm,n_r_ic_max) [complex ,in]

• aj_ic (1 - llm + ulm,n_r_ic_max) [complex ,in]

• npotsets [integer ,in]

• root [character(len=*),in]

• omega_ma [real ,in]

• omega_ic [real ,in]

Called from:

fields_average(), output()

Call to:

mpiio_setup(), gather_all_from_lo_to_rank0()

subroutine  out_coeff/write_pot(time, b, aj, b_ic, aj_ic, npotsets, root, omega_ma, omega_ic)

This routine stores the fields in spectral and radial space

Parameters:

• time [real ,in] :: Output time

• b (1 - llm + ulm,n_r_max) [complex ,in]

• aj (1 - llm + ulm,n_r_max) [complex ,in]

• b_ic (1 - llm + ulm,n_r_ic_max) [complex ,in]

• aj_ic (1 - llm + ulm,n_r_ic_max) [complex ,in]

• npotsets [integer ,in]

• root [character(len=*),in] :: File prefix

• omega_ma [real ,in]

• omega_ic [real ,in]

Call to:

gather_all_from_lo_to_rank0()

field_average.f90

Description

This module is used when one wants to store time-averaged quantities

Quick access

Variables:

aj_ave_lmloc, aj_ave_rloc, aj_ic_ave, b_ave_lmloc, b_ave_rloc, b_ic_ave, bicb, p_ave_lmloc, p_ave_rloc, phi_ave_lmloc, phi_ave_rloc, s_ave_lmloc, s_ave_rloc, w_ave_lmloc, w_ave_rloc, xi_ave_lmloc, xi_ave_rloc, z_ave_lmloc, z_ave_rloc

Routines:

fields_average(), finalize_fields_average_mod(), initialize_fields_average_mod()

Needed modules

• truncation: This module defines the grid points and the truncation

• precision_mod: This module controls the precision used in MagIC

• mem_alloc (bytes_allocated()): This little module is used to estimate the global memory allocation used in MagIC

• communications (get_global_sum(), gather_from_lo_to_rank0(), gather_all_from_lo_to_rank0(), gt_oc(), gt_ic()): This module contains the different MPI communicators used in MagIC.

• radial_data (n_r_cmb(), n_r_icb(), nrstart(), nrstop()): This module defines the MPI decomposition in the radial direction.

• radial_functions (chebt_ic(), chebt_ic_even(), r(), dr_fac_ic(), rscheme_oc(), l_r()): This module initiates all the radial functions (transport properties, density, temperature, cheb transforms, etc.)

• blocking (lm2(), llm(), ulm(), llmmag(), ulmmag()): Module containing blocking information

• logic (l_mag(), l_conv(), l_save_out(), l_heat(), l_cond_ic(), l_chemical_conv(), l_phase_field(), l_onset()): Module containing the logicals that control the run

• kinetic_energy (get_e_kin()): This module handles the computation of kinetic energy and the time-averaged radial profiles.

• magnetic_energy (get_e_mag()): This module handles the computation and the writing of the diagnostic files related to magnetic energy: e_mag_oc.TAG, e_mag_ic.TAG, dipole.TAG, eMagR.TAG

• output_data (tag(), n_log_file(), log_file(), n_graphs(), l_max_cmb()): This module contains the parameters for output control

• parallel_mod (rank()): This module contains the blocking information

• sht (torpol_to_spat(), scal_to_spat())

• constants (zero(), vol_oc(), vol_ic(), one()): module containing constants and parameters used in the code.

• out_coeff (write_pot_mpi()): This module contains the subroutines that calculate the Bcmb files, the [B|V|T]_coeff_r files and the [B|V|T]_lmr files

• spectra (spectrum()): This module handles the computation and the writing of spectra. It handles both 2-D spectra in (r,l) and (r,m) spaces and usual spectra integrated over all radii in (l) or (m) spaces….

• graphout_mod (graphout_mpi(), graphout_mpi_header()): This module contains the subroutines that store the 3-D graphic files.

• radial_der_even (get_drns_even(), get_ddrns_even())

• radial_der (get_dr()): Radial derivatives functions

• fieldslast (dwdt(), dpdt(), dzdt(), dsdt(), dxidt(), dbdt(), djdt(), dbdt_ic(), djdt_ic(), domega_ma_dt(), domega_ic_dt(), dphidt(), lorentz_torque_ic_dt(), lorentz_torque_ma_dt()): This module contains all the work arrays of the previous time-steps needed to time advance the code. They are needed in the time-stepping scheme….

• storecheckpoints: This module contains several subroutines that can be used to store the checkpoint_#.tag files

• time_schemes (type_tscheme()): This module defines an abstract class type_tscheme which is employed for the time advance of the code.

Variables

• fields_average_mod/aj_ave_lmloc (*,*) [complex,private/allocatable]

• fields_average_mod/aj_ave_rloc (*,*) [complex,private/allocatable]

• fields_average_mod/aj_ic_ave (*,*) [complex,private/allocatable]

• fields_average_mod/b_ave_lmloc (*,*) [complex,private/allocatable]

• fields_average_mod/b_ave_rloc (*,*) [complex,private/allocatable]

• fields_average_mod/b_ic_ave (*,*) [complex,private/allocatable]

• fields_average_mod/bicb (*) [complex,private/allocatable]

• fields_average_mod/p_ave_lmloc (*,*) [complex,private/allocatable]

• fields_average_mod/p_ave_rloc (*,*) [complex,private/allocatable]

• fields_average_mod/phi_ave_lmloc (*,*) [complex,private/allocatable]

• fields_average_mod/phi_ave_rloc (*,*) [complex,private/allocatable]

• fields_average_mod/s_ave_lmloc (*,*) [complex,private/allocatable]

• fields_average_mod/s_ave_rloc (*,*) [complex,private/allocatable]

• fields_average_mod/w_ave_lmloc (*,*) [complex,private/allocatable]

• fields_average_mod/w_ave_rloc (*,*) [complex,private/allocatable]

• fields_average_mod/xi_ave_lmloc (*,*) [complex,private/allocatable]

• fields_average_mod/xi_ave_rloc (*,*) [complex,private/allocatable]

• fields_average_mod/z_ave_lmloc (*,*) [complex,private/allocatable]

• fields_average_mod/z_ave_rloc (*,*) [complex,private/allocatable]

Subroutines and functions

subroutine  fields_average_mod/initialize_fields_average_mod()

Called from:

magic

subroutine  fields_average_mod/finalize_fields_average_mod()

Called from:

magic

subroutine  fields_average_mod/fields_average(simtime, tscheme, nave, l_stop_time, time_passed, time_norm, omega_ic, omega_ma, w, z, p, s, xi, phi, b, aj, b_ic, aj_ic)

This subroutine averages fields b and v over time.

Parameters:

• simtime [real ,in]

• tscheme [real ]

• nave [integer ,in] :: number for averaged time steps

• l_stop_time [logical ,in] :: true if this is the last time step

• time_passed [real ,in] :: time passed since last log

• time_norm [real ,in] :: time passed since start of time loop

• omega_ic [real ,in]

• omega_ma [real ,in]

• w (1 - llm + ulm,n_r_max) [complex ,in]

• z (1 - llm + ulm,n_r_max) [complex ,in]

• p (1 - llm + ulm,n_r_max) [complex ,in]

• s (1 - llm + ulm,n_r_max) [complex ,in]

• xi (1 - llm + ulm,n_r_max) [complex ,in]

• phi (1 - llm + ulm,n_r_max) [complex ,in]

• b (1 - llmmag + ulmmag,n_r_maxmag) [complex ,in]

• aj (1 - llmmag + ulmmag,n_r_maxmag) [complex ,in]

• b_ic (1 - llmmag + ulmmag,n_r_ic_maxmag) [complex ,in]

• aj_ic (1 - llmmag + ulmmag,n_r_ic_maxmag) [complex ,in]

Called from:

output()

Call to:

get_ddrns_even(), get_drns_even(), spectrum(), get_e_kin(), get_e_mag(), open_graph_file(), graphout_mpi_header(), gather_from_lo_to_rank0(), torpol_to_spat(), scal_to_spat(), graphout_mpi(), gather_all_from_lo_to_rank0(), graphout_ic(), close_graph_file(), write_bcmb(), write_pot_mpi(), store_mpi()